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Maybe add `--disable-integrity-checking`  will solve my issue ?

There is a good chance `--disable-integrity-checking` will allow you to repair a snapshot, yes; I'm not sure if the automation API currently exposes this or not.

Yeah, not sure that flag specifically is supported, but worth checking in the language SDK of your choice.

Recommend upvoting <https://github.com/pulumi/pulumi/issues/16405> and commenting with your use case as that is likely the avenue we hope to pursue to support the long tail of CLI flags in automation api