I have a stack that I deleted using pulumi destory but I can still see resources in the console. Cannot delete them using the console because it says that I don’t have permission. Any thoughts on what can be done to clean up the resources?

Does whatever user/role Pulumi uses have permission? If not, then you'll have to fix that.

I used my account role. Turns out the issue came from a nested dependency to a db subnet which also did not get deleted and without deleting it, none of the ENIs, SGs or Subnets could be deleted.

Ah. Usually that sort of thing reports an error, but if the API accepts the request and the failure doesn't happen until later, then there's nothing Pulumi can do about it..