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this is what I came up with:
1. export stack state with `pulumi stack export &gt; stack.json`
2. manually add CRD into `stack.json`
3. import state back with `pulumi stack import --file stack.json`
4. refresh resource state with `pulumi refresh -t 'urn:...'`  - this is to prevent replacement of CRD
5. sync with regular `pulumi up`
but this is rather tedious and I think it'll be useful to have some pulumi subcommand for this.